People
Xinping Cui
Mailing Address:
StatisticsStatistics-Computing /2642
University of California
Riverside, CA 92521
Phone: (951) 827 2563
Fax: (951) 827 3286
Email: xinping.cui@ucr.edu
Website
Degree(s):
PhD 2002 University of California, Los AngelesCollege/Division Affiliation:
College of Natural and Agricultural SciencesCenter/Inst Affiliation(s):
Center for Plant Cell BiologyAreas Of Expertise:
Design and Analysis of Gene Expression Experiments Using DNA Microarrays; SNP/SFP Discovery Using DNA MicroarraysResearch Summary:
We are interested in developing unified, automated statistical algorithms to discover newly-developed microarray-based single-feature polymorphism markers (SFPs) and gene expression markers (GEMs) in crops on a genome scale. We have successfully developed the algorithm based on robust projection pursuit (RPP) method to identify SFPs between two genotypes, with application in Barley, Rice, Cowpea and Wheat genome. We are currently working on extending the RPP method for more powerful SFPs identification among multiple genotypes and a mixture model-based method for GEMs identification.
Selected Publications:
Lab Personnel: +
- You, Na
- Postdoctoral Researcher — Statistical Algorithm for Single Feature Polymorphism Detection
- Chen, Xin
- Graduate Student — Preprocessing of Affymetrix Microarray
- Shi, Nigie
- Graduate Student — Association Study to Discover Correlates of Health and Disease Processes in Large Data Sets from Microbial Ecology Studies
- Wilson, Jason
- Graduate Student — Statistical Ranking and Selection with Application to Microarray